Ensembl S.cerevisiae

 

What's New in Ensembl 34

    • Compara database
      • Addition of pairwise (Translated BLAT) Mouse/Fugu
      • Addition of multiple alignments (Mercator/Mlagan) Human/Mouse/Rat/Dog
    • Display of regulatory factors

      A new dynamic page, GeneRegulationView, displays all the regulatory factors for a given gene; it can be reached via the lefthand menu on a GeneView page where the gene has regulatory information available.
      Read more...

    • News archive

      "What's New" items from releases prior to the new website design have been imported into the database, and can now be accessed through a new dynamic page, NewsView.
      Read more...

    • Species statistics

      The statistics table on each species home page now shows the correct date of the last full genebuild, rather than the date of the last database update.
      Read more...

    • Schema version checking

      The 'schema version' entries in the core 'meta' table have been changed to hold the current version numbers. This allows the API to check that the software and databases are using the same versions and give meaningful error messages.

More news...

Karyotype

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About the S. cerevisiae genome

Assembly and Annotation

Saccharomyces cerevisiaeThe data on this site is a direct import of the Saccharomyces Genome Database dataset for the Saccharomyces cerevisiae S288C genome. No additional genebuild was carried out, but a series of blast runs was done to provide ESTs, Swall hits, and other similarity data.

We have included S.cerevisiae into the Ensembl system to allow people to access the data through the Ensembl user interface (both for visualisation and data mining) and to provide cross-species integration through our comparative genomics resources (such as homologous gene links and protein family/domain pages).

The canonical data for S.cerevisiae is managed at SGD.

Image courtesy American Society for Microbiology

Statistics

Assembly: SGD 1, Feb 2005
Genebuild: SGD, Feb 2005
Database version: 34.1b
Gene predictions (incl. 22 pseudogenes): 6,702
Genscan gene predictions: 4,768
Genefinder gene predictions: 4,414
Gene exons: 7,050
Gene transcripts: 6,702
Base Pairs: 12,156,590
Golden Path Length: 12,156,590
Most common InterPro domains: Top 40 Top 500

 

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Ensembl v34 - Oct 2005
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