Ensembl Mouse

 

Explore the Mouse genome

What's New in Ensembl 34

    • Agilent xrefs
      Addition of Agilent xrefs to the core databases of human (probes and CGH), mouse (probes only) and rat (probes only).
    • Vega Mouse geneset in Ensembl

      Release 34 features the first ever release of Mouse Vega genes (chromosomes 1, 3, 4, 11 and 13) in Ensembl. See Vega Mouse for details of the annotated regions.

    • Compara database
      • Addition of pairwise (Translated BLAT) Mouse/Fugu
      • Addition of multiple alignments (Mercator/Mlagan) Human/Mouse/Rat/Dog
    • Display of regulatory factors

      A new dynamic page, GeneRegulationView, displays all the regulatory factors for a given gene; it can be reached via the lefthand menu on a GeneView page where the gene has regulatory information available.
      Read more...

    • News archive

      "What's New" items from releases prior to the new website design have been imported into the database, and can now be accessed through a new dynamic page, NewsView.
      Read more...

More news...

Karyotype

Click on a chromosome for a closer view

chromosome 1 chromosome 2 chromosome 3 chromosome 4 chromosome 5 chromosome 6 chromosome 7 chromosome 8 chromosome 9 chromosome 10 chromosome 11 chromosome 12 chromosome 13 chromosome 14 chromosome 15 chromosome 16 chromosome 17 chromosome 18 chromosome 19 chromosome X chromosome Y chromosome MT Mouse karyotype selector

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About the Mouse genome

Assembly

Ensembl Mouse is based on the NCBI m34 mouse assembly (freeze May 17, 2005, strain C57BL/6J).

Mouse Genome Sequencing ConsortiumThe Mouse Genome Sequencing Consortium is a joint project between The Whitehead Institute/MIT Center for Genome Research, The Washington University Genome Sequencing Center, The Wellcome Trust Sanger Institute and EMBL - EBI to provide the Mouse genome sequence to the world. We work closely with other Mouse groups to provide an integrated resource (see below for credits).

Annotation

This site provides a full Ensembl gene build for the above assembly. There are some major changes in the assembly; for more details see the NCBI build statistics . The un-assembled pieces of the Y-chromosome will probably be re-integrated in the upcoming build 35.

Modifications to the systems have further improved the gene set. More than 93% of known genes from build m33 retain the same Ensembl gene ids in this release. Of novel genes only 55% of identifiers are retained, half of those lost were pseudogenes.

Links

Statistics

Assembly: NCBI m34, May 2005
Genebuild: Ensembl, July 2005
Database version: 34.34b
Gene predictions (incl. 1383 pseudogenes): 26,996
Genscan gene predictions: 81,307
Gene exons: 245,205
Gene transcripts: 37,854
Base Pairs: 2,267,775,209
Golden Path Length: 2,604,449,128
Most common InterPro domains: Top 40 Top 500
 

© 2008 WTSI / EBI. Ensembl is available to download for public use - please see the code licence for details.

                
Ensembl v34 - Oct 2005
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