A new dynamic page, GeneRegulationView, displays all the regulatory factors for a given gene; it can be reached via the lefthand menu on a GeneView page where the gene has regulatory information available.
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"What's New" items from releases prior to the new website design have been imported into the database, and can now be accessed through a new dynamic page, NewsView.
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The statistics table on each species home page now shows the correct date of the last full genebuild, rather than the date of the last database update.
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The 'schema version' entries in the core 'meta' table have been changed to hold the current version numbers. This allows the API to check that the software and databases are using the same versions and give meaningful error messages.
Click on a chromosome for a closer view
Ensembl data and displays for A. gambiae are made possible through a
joint effort by the Ensembl Group and VectorBase, a NIAID
Bioinformatics Resource Center. Further details, as well as additional
A. gambiae and other vector-specific data, can be found at VectorBase.org.
Ensembl presents the tenfold whole genome shotgun assembly ("MOZ2") of the PEST strain of Anopheles gambiae, as prepared by The International Anopheles Genome Project [March 2002]. The assembled portion of the genome is about 278 Mbp in length with a total of 8,987 unique scaffolds, the largest scaffold being 23.1 Mbp.
Approximately 82% of the sequence has been assigned to chromosomal locations; chromosome arms 2L, 2R, 3L, 3R, and X are represented by 9, 20, 20, 8, and 10 large scaffolds respectively. No scaffolds have yet been assigned to the Y chromosome. Ensembl shows the unassigned scaffolds, concatenated together in arbitrary order, as an artificial unknown 'chromosome' (UNKN).
Ensembl re-annotated the assembly in October 2003 (release 2a) to provide improved genome-wide sets of gene, transcript and protein predictions, plus additional information including new EST mappings, additional repeats (library available), and ab initio transcript predictions from Ian Korf's SNAP program. Protein predictions identified by collaborators as probably arising from bacterial contamination in the assembly were removed from the set in April 2004 (release 2b).
The genomic sequence and initial annotation of A. gambiae was published in October 2002 in Science (abstract). An update appeared in Trends in Parasitology. See also this EMBL press release (PDF).
| Assembly: | MOZ 2a, Mar 2002 |
| Genebuild: | Ensembl, Oct 2003 |
| Database version: | 34.2g |
| Gene predictions : | 14,707 |
| Gene exons: | 57,688 |
| Gene transcripts: | 16,148 |
| Base Pairs: | 278,253,050 |
| Golden Path Length: | 278,215,782 |
| Most common InterPro domains: | Top 40 Top 500 |
© 2008 WTSI / EBI. Ensembl is available to download for public use - please see the code licence for details.
